Canada · Self-employed · Partnerships · Corporations

What Triggers a CRA Audit of a Small Business

The CRA publishes no list of audit triggers. Its risk-assessment systems flag returns at high risk of non-compliance, and GST/HST returns can also be picked at random. In an audit, error-prone books, mixed business and personal accounts, lifestyle that does not match income, and income below similar businesses lead it to check income indirectly. Clean books cannot guarantee no audit.

Di Lu, CPA
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Tax year 2026 · Last updated  · Published by Cloud Accounting under standing professional approval

Who this is for

  • Sole proprietors, partners and corporation owners asking what makes the CRA audit a small business
  • Owners checking whether their books would answer an auditor's first questions

Not covered here

  • What to do after a review or audit letter arrives, and voluntary disclosure
  • How many years the CRA can reassess
  • How a GST/HST or payroll audit is run
  • Quebec and Alberta provincial audits of corporation tax, and Revenu Québec audits of GST/HST and individual income tax

How does the CRA pick a small business or corporation for audit?

The CRA publishes no list of audit triggers. It says its risk-assessment systems identify returns at high risk of non-compliance, and a CRA officer then reviews information from various sources to decide whether an audit is needed (CRA: business audits). The assessment looks at factors such as how often errors appear in tax returns, and the CRA may compare a file with similar files (CRA: What you should know about audits). The CRA's pages name only some factors and give no weights, so any longer "trigger list" is a guess.

The CRA does publish the signs that lead it to verify income indirectly in a business audit. They are in the next section. A case is not simple when business and personal money share an account, a corporation's owner owes it money across year-ends, reported income runs below similar businesses, or the CRA has already written. A letter that asks for support of one claim is usually a review, not an audit; the CRA review or audit letter guide explains the difference.

Gather first: every bank and card statement for the years in question (business and personal), sales records tied to deposits, the shareholder loan ledger if there is a corporation, and the filed returns tied back to the books.

What signs of unreported income does the CRA look for?

The CRA says it will generally use an indirect verification of income method when there are indications of one or more of five signs (CRA: business audits). These are the CRA's own words for when it checks income indirectly in an audit; the CRA does not say they decide which files are selected. Indirect verification means the CRA tests the income reported by an alternative method, not only the books.

Sign the CRA listsRecords that help
The books and records are prone to errorReconciled bank accounts, a source document behind each entry, and someone besides the person who keeps the books reviewing them
Business and personal bank accounts may have been used interchangeablySeparate accounts, and every personal payment recorded as an owner draw, shareholder loan or repayment
Lifestyle does not seem to match the income reportedOwner pay (draws, salary, dividends) that visibly covers personal spending, plus papers for other money the household lives on: a spouse's pay, savings or gifts brought from abroad, a property sale
The business is in a sector considered high risk for unreported incomeThe CRA's page names no sectors. Complete sales records tied to deposits, including cash banked and till or point-of-sale reports; the sector cannot be changed
The business consistently reports income lower than similar businesses in its sectorSales records tied to deposits, plus invoices or costs that explain a lower margin

The most common indirect method is the net worth method. The CRA says it needs a complete financial picture of the owner's family unit, so where it uses this method it will ask for the personal financial records of the business owner's spouse and any other contributing member of the household (CRA: business audits). Online platforms that report sales to the CRA are covered in CRA digital platform reporting.

Does using one bank account for business and personal spending raise the risk?

Yes, once an audit starts. The CRA names interchangeable business and personal accounts as a sign that leads to an indirect income check (CRA: business audits); it does not say the sign decides which files are picked. The Act requires records in a form and with information that let the tax payable be determined (Income Tax Act, subsection 230(1)). A mixed account makes each line a question: business expense, owner draw, or something else.

For a sole proprietor or partner, personal payments are owner draws and not expenses. For a corporation, personal costs it pays can become a taxable benefit to the owner (subsection 15(1)) or a loan the owner owes it; see shareholder benefits found in an audit. Where the accounts are already mixed, list each personal payment on a working copy with its support, and keep the statements as the bank issued them. For a corporation, a shareholder loan entry needs evidence of a genuine obligation to repay; without it the payment may be a taxable benefit instead, and an accounting entry alone does not decide which (CRA shareholder loan folio, paragraphs 1.13–1.14). See rebuilding books from bank statements. Business costs you paid personally are recorded the other way; see business expenses paid personally.

If sorting the records shows income or tax missing from a return already filed, read about voluntary disclosure before filing a correction: before any CRA contact, after contact. Whether a disclosure is accepted depends on timing and other conditions.

What does it mean that books are prone to error, and what do clean books look like?

The CRA says books and records may be prone to error when one person does most of the accounting, or when the main functions in a business are done by one person or a small group of related persons (CRA: business audits). If you keep the books yourself and nobody reviews them, see doing your own books or hiring a bookkeeper. The CRA does not define "clean books". The first row below is a legal requirement and the second is CRA guidance on it; the rest are practical steps that help with the signs above.

What clean books showWhy it matters
Records and books of account that let the tax payable be determinedRequired by subsection 230(1)
A source document behind each entry (sales and purchase invoices, bank statements, cheques, deposit slips, contracts)The CRA says books and records must be supported by source documents that verify them (IC78-10R5)
Bank and card accounts reconciled to the books each monthErrors surface while the paper is still at hand
GST/HST and income tax returns tied to the booksShows each return comes from the books
A dated shareholder loan ledger (corporations)See the shareholder loan section below

The signs table above also lists sales tied to deposits and a second reviewer.

If records are inadequate, the Minister may require a person to keep the records and books the Minister specifies (subsection 230(3)).

Do a big shareholder loan or large retained earnings get a corporation flagged?

The CRA's list of signs does not include retained earnings or a shareholder loan balance, and its pages on business audits, audit selection and GST/HST audits name neither as a trigger. Retained earnings is the profit a corporation has kept.

A shareholder loan matters for a different reason: if an audit reaches the corporation's books, the balance decides whether a tax rule applies. A shareholder, or a person connected with one, who receives a loan from the corporation or becomes indebted to it generally has the amount included in income for that year (subsection 15(2)). The rule does not reach a borrower that is a corporation resident in Canada, or a partnership made up only of such corporations. It is not included if repaid within one year after the end of the corporation's tax year in which the loan was made, and the repayment is not part of a series of loans or other transactions and repayments (subsection 15(2.6)). Other exceptions are in subsections 15(2.2) to 15(2.5).

A balance that has grown across year-ends needs a dated ledger showing what was taken, what was repaid and how. See shareholder loan account for the ledger and shareholder loans for the rule.

Can GST/HST returns be picked for audit separately?

Yes. The CRA says GST/HST returns are selected for audit or examination on both risk assessment and random file selection, and that these audits focus on filing errors and omissions (CRA: GST/HST audit and examination). The same page says refund requests are reviewed before payment and some are examined further. That CRA page shows the date June 22, 2017.

Random selection means a GST/HST return can be picked without any risk flag, so the GST/HST return needs to tie to the same sales and purchase records as the income tax return. For a GST/HST letter, see GST/HST reviews and audits.

What will an auditor ask for first, and whose records are in scope?

The CRA says the auditor will normally ask for your electronic records before meeting with you (CRA: business audits). Auditors cannot receive files by email; documents go in by a secure online service, by mail, or to a CRA office.

The records in scope reach beyond the business (CRA tax tip; CRA: business audits):

Whose records or inputExamples the CRA gives
The businessLedgers, journals, invoices, receipts, contracts, bank statements
The owners, personallyPersonal bank statements, mortgage documents, credit card statements
Related people and entitiesA spouse, family members, corporations, partnerships, a trust
Advisers and staffInput from the accountant, bookkeeper or employees

The CRA may also group related entities as an economic entity and audit more than one member. If the auditor proposes changes, the proposal letter gives 30 days to agree or disagree (RC4188).

What records should I keep, in what form, and for how long?

Keep most records and books of account, with the supporting vouchers, for six years from the end of the last tax year they relate to (subsection 230(4); CRA: keeping records).

QuestionRule
WhatRecords and books of account, plus the source documents behind them: sales and purchase invoices, bank statements, cheques, deposit slips, contracts, correspondence
WhereAt your place of business or residence in Canada. Records kept outside Canada and accessed electronically from Canada are not records kept in Canada unless the CRA gives written permission (CRA: keeping records), so check where your accounting software stores the data
FormIf you keep records electronically, keep them in an electronically readable format, even if you also keep paper
How longFrom the end of the last tax year they relate to; a late-filed income tax return starts the clock on the date you file it (subsection 230(5)); GST/HST has its own rule, so see the retention guide below

Records of long-term property and shares and other history that affects a later sale or wind-up may need to be kept indefinitely (CRA: keeping records). Other periods apply when a business or corporation closes or an objection or appeal is filed; see how long to keep business records. Scanned copies and cloud storage are in scanned receipts for the CRA. What a receipt must show is in CRA receipt requirements. How far back the CRA can reassess is a separate limit; see how far back the CRA can reassess.

Can clean books guarantee no audit?

No. The CRA picks files by risk assessment, may compare them with similar files, and for GST/HST also picks at random. It can also consider information from other audits or investigations (RC4188; CRA: GST/HST audit and examination). Random selection does not depend on your books, and information from other audits comes from outside them.

What clean books change is how an audit goes. The CRA's risk assessment looks at the likelihood or frequency of errors in returns, so accurate returns help on that factor; the CRA does not say how much it weighs. Tied-out records also let you answer audit questions with documents, though the CRA decides what it accepts. An audit does not mean the return was wrong: the CRA says it ends with no adjustment, a reassessment with more tax, or a reassessment with a refund (RC4188).

Example

These examples are illustrative; all amounts are Canadian dollars.

Groceries paid from the business account

A sole proprietor contractor has C$90,000 of revenue. All year, groceries and the owner's home rent come out of the business account, about C$24,000 in total. Interchangeable accounts are a listed sign. A common answer has two parts: open a separate personal account going forward, and record the personal part of the C$24,000 already paid as owner draws, not expenses. Business costs stay business expenses. A dated draw record lets the owner show which payments were which.

An owner who owes the corporation

A corporation with a December year-end lends its individual shareholder C$45,000 in March of Year 1. A written agreement shows a genuine obligation to repay, and no other loan exception applies.

  • End of Year 1: the books show C$45,000 due from shareholder.
  • End of Year 2: the balance is still C$45,000. The repayment window for the Year 1 amount closed on December 31 of Year 2.
  • After Year 2: if it was not repaid in that window, the C$45,000 may be included in the owner's Year 1 income. A repayment that is part of a series of loans and repayments does not count. The loan ledger and repayment dates are the first thing to check.
  • If included: a later repayment is deductible in the year it is made, unless it is part of such a series (paragraph 20(1)(j)).

Without a genuine obligation to repay, the same payment may instead be a shareholder benefit included in Year 1 income under subsection 15(1); a loan-account entry alone does not create the repayment window.

A shop that reports less than similar shops

A small shop reports sales of C$150,000, C$148,000 and C$152,000 in three years, and income below similar shops in its sector each year. That is a listed sign. The shop keeps daily till reports and reconciles gross sales to deposits, cash still held, documented cash spending, card fees and timing differences. Sales stay recorded even when the proceeds were not banked. It also keeps supplier invoices and the lease, so a lower margin than similar shops has a documented reason.

Bookkeeping

Books mixed, or income low for your sector?

If owner and business money are mixed, a shareholder loan has grown across year-ends, or a CRA letter has arrived, we can take on the clean-up or catch-up books before your next filing. The first call covers your situation and the scope of the work.

  • Business and personal bank and card statements for the years in question.
  • The shareholder loan ledger, filed income tax and GST/HST returns, and any CRA letter.

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Figures on this page

FigureValueSource
Shareholder loan repayment exception deadline
Subsection 15(2.6) applies when the corporation is the lender and repayment is not part of a series of loans or other transactions and repayments
One year after the end of the corporation's tax year in which the loan was madeIncome Tax Act, subsection 15(2.6)
Checked
CRA audit proposal response period
Time to agree or disagree with a CRA audit proposal; check the letter's reply date
30 daysCRA: What you should know about audits
Checked
General business-record retention period
From the end of the last tax year to which the records and supporting documents relate; longer retention can apply
Six yearsCRA: Where to keep your records, for how long and how to request permission to destroy them early
Checked

Primary sources

About this guide

Published by Cloud Accounting under standing professional approval. This version has no separately recorded personal review. It explains general rules for the tax year shown. It is not advice for your situation.

Changes

  • : First published.
Di Lu, CPA
Di Lu, CPAUS and Canadian CPA

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